PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_54612_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 120aa    MW: 13850.3 Da    PI: 9.0448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_54612_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-183784148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                         +g+WT+eEde+l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  cra_locus_54612_iso_1_len_357_ver_3 37 KGAWTKEEDERLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 84
                                         79******************************99************97 PP

2Myb_DNA-binding32.61.9e-1090119131
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                                          rg++T+eEdel+++++ +lG++ W++Ia ++
  cra_locus_54612_iso_1_len_357_ver_3  90 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRL 119
                                          89********************.*****876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-252887IPR009057Homeodomain-like
PROSITE profilePS5129423.8623288IPR017930Myb domain
SMARTSM007178.2E-143686IPR001005SANT/Myb domain
PfamPF002495.6E-163784IPR001005SANT/Myb domain
SuperFamilySSF466891.19E-2538115IPR009057Homeodomain-like
CDDcd001673.02E-103984No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1588119IPR009057Homeodomain-like
PROSITE profilePS5129414.36589120IPR017930Myb domain
SMARTSM007172.989120IPR001005SANT/Myb domain
PfamPF002491.5E-890119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
XAGGLHTYFP DLSNRTQTER ERSMGRSPCC EKEHTNKGAW TKEEDERLIA YIRAHGEGCW  60
RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFTEEEDEL IIKLHSLLGN KWSLIAGRLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-203611926108MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.14e-64PREDICTED: myb-related protein 308-like
RefseqXP_013629672.15e-64PREDICTED: transcription repressor MYB4
RefseqXP_013685716.15e-64PREDICTED: transcription repressor MYB4-like
RefseqXP_013652821.15e-64PREDICTED: transcription repressor MYB4-like
SwissprotP813939e-66MYB08_ANTMA; Myb-related protein 308
SwissprotQ9SZP12e-65MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A0S3R9U95e-65A0A0S3R9U9_PHAAN; Uncharacterized protein
STRINGBra033572.1-P6e-63(Brassica rapa)
STRINGSolyc10g055410.1.13e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154